@prefix dce: <http://purl.org/dc/elements/1.1/>.
@prefix foaf: <http://xmlns.com/foaf/0.1/>.
@prefix owl: <http://www.w3.org/2002/07/owl#>.
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>.
@prefix skos: <http://www.w3.org/2004/02/skos/core#>.
@prefix xsd: <http://www.w3.org/2001/XMLSchema#>.
@prefix xsd: <http://www.w3.org/2001/XMLSchema#>.
@prefix agent: <http://eulersharp.sourceforge.net/2003/03swap/agent#>.
@prefix organism: <http://eulersharp.sourceforge.net/2003/03swap/organism#>.
@prefix mic: <http://www.agfa.com/w3c/2009/microbiology#>.
@prefix clinskosch: <http://www.agfa.com/w3c/2009/clinicalSKOSSchemes#>.
@prefix abther: <http://www.agfa.com/w3c/2009/antibioticTherapy#>.
@prefix bac: <http://www.agfa.com/w3c/2009/bacteria#>.
<http://www.agfa.com/w3c/2009/bacteria>
a owl:Ontology;
dce:title """Bacteria"""@en;
dce:creator """Hans Cools, MD; Agfa Healthcare/Belgium"""@en;
dce:contributor """Until 2010: Pieterjan De Potter; Ghent University - IBBT/ELIS - Multimedia Lab/Belgium"""@en;
dce:publisher """Agfa Healthcare/Belgium"""@en;
dce:description """Formal description of bacteria in general way."""@en;
skos:note """For taxonomic relation http://www.uniprot.org/taxonomy/ is used."""@en;
dce:format """OWL Full"""@en;
rdfs:comment """Copyright (c) 2009 Agfa-Gevaert Group / Ghent University - IBBT/ELIS - Multimedia Lab All Rights Reserved THIS IS UNPUBLISHED PROPRIETARY SOURCE CODE OF Agfa-Gevaert Group/ Ghent University - IBBT/ELIS - Multimedia Lab The copyright notice above does not evidence any actual or intended publication of such source code."""@en.
bac:Bacterium
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """bacterium"""@en;
skos:definition """Unicellular organism without intracellular membranes, different from Archaeum mainly in DNA replication."""@en;
rdfs:subClassOf mic:UnicellularOrganism, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/2>].
bac:BacterialPopulation
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """bacterial population"""@en;
skos:definition """Aggregation of bacteria growing together."""@en;
rdfs:subClassOf agent:Group;
rdfs:subClassOf [
a owl:Restriction; owl:onProperty foaf:member; owl:someValuesFrom bac:Bacterium], [
a owl:Restriction; owl:onProperty foaf:member; owl:minCardinality "2"^^xsd:nonNegativeInteger].
bac:BacterialColony
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """bacterial colony"""@en;
skos:definition """Aggregation of bacteria growing together as offspring of a single cell."""@en;
rdfs:subClassOf agent:Offspring, bac:BacterialPopulation.
bac:Proteobacterium
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Proteobacterium"""@en;
rdfs:subClassOf bac:Bacterium, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/1236>];
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "409852006"^^clinskosch:sct20080731DT].
bac:Betaproteobacterium
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Betaproteobacterium"""@en;
rdfs:subClassOf bac:Proteobacterium;
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "409853001"^^clinskosch:sct20080731DT].
bac:Neisserialis
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Neisserialis"""@en;
rdfs:subClassOf bac:Betaproteobacterium;
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "427587002"^^clinskosch:sct20080731DT].
bac:Neisseriacea
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Neisseriacea"""@en;
rdfs:subClassOf bac:Neisserialis;
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "115072003"^^clinskosch:sct20080731DT].
bac:Neisseria
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Neisseriacea"""@en;
rdfs:subClassOf bac:Neisseriacea;
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "59083001"^^clinskosch:sct20080731DT].
bac:NeisseriaMeningitidis
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Neisseria meningitidis"""@en;
rdfs:subClassOf bac:Neisseria, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/487>];
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "17872004"^^clinskosch:sct20080731DT].
bac:Gammaproteobacterium
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Gammaproteobacterium"""@en;
rdfs:subClassOf bac:Proteobacterium, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/1236>];
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "413864003"^^clinskosch:sct20080731DT].
bac:Vibrionales
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Vibrionales"""@en;
rdfs:subClassOf bac:Gammaproteobacterium, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/135623>].
bac:Vibrionaceae
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Vibrionaceae"""@en;
rdfs:subClassOf bac:Vibrionales, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/641>].
bac:Vibrio
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Vibrio"""@en;
rdfs:subClassOf bac:Vibrionaceae, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/662>].
bac:VibrioCholerae
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Vibrio cholerae"""@en;
rdfs:subClassOf bac:Vibrio, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/666>].
bac:Enterobacterialis
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Enterobacterialis"""@en;
rdfs:subClassOf bac:Gammaproteobacterium, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/91347>];
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "417937002"^^clinskosch:sct20080731DT].
bac:Enterobacteriacea
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Enterobacteriacea"""@en;
rdfs:subClassOf bac:Enterobacterialis, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/543>];
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "106544002"^^clinskosch:sct20080731DT].
bac:Escherichia
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Escherichia"""@en;
rdfs:subClassOf bac:Enterobacteriacea, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/561>];
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "64735005"^^clinskosch:sct20080731DT].
bac:EscherichiaColi
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Escherichia coli"""@en;
rdfs:subClassOf bac:Escherichia, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/562>];
skos:exactMatch [
a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "112283007"^^clinskosch:sct20080731DT].
bac:EscherichiaColiUTI89
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Escherichia coli strain UTI89"""@en;
skos:definition """Escherichia coli strain that causes urinary tract infections."""@en;
rdfs:subClassOf bac:EscherichiaColi, [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/364106>].
bac:StreptococcusPneumoniae
a rdfs:Class;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
rdfs:label """Streptococcus pneumoniae"""@en;
rdfs:comment """Most common bacterial cause of pneumonia in all age groups except newborn infants."""@en;
rdfs:subClassOf [
a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/189423>].
bac:resistantTo
a owl:ObjectProperty;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
skos:definition """Specifying an antibiotic a bacterium is resistant to."""@en;
rdfs:domain bac:Bacterium;
rdfs:range [a owl:Restriction; owl:onProperty agent:playsRole; owl:someValuesFrom abther:Antibiotic].
bac:susceptibleTo
a owl:ObjectProperty;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
skos:definition """Specifying an antibiotic a bacterium is susceptible to."""@en;
rdfs:domain bac:Bacterium;
rdfs:range [a owl:Restriction; owl:onProperty agent:playsRole; owl:someValuesFrom abther:Antibiotic].
bac:intermediateSusceptibleTo
a owl:ObjectProperty;
rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
skos:definition """Specifying an antibiotic a bacterium is intermediately susceptible to."""@en;
rdfs:domain bac:Bacterium;
rdfs:range [a owl:Restriction; owl:onProperty agent:playsRole; owl:someValuesFrom abther:Antibiotic].