@prefix dce: <http://purl.org/dc/elements/1.1/>.
@prefix foaf: <http://xmlns.com/foaf/0.1/>.
@prefix owl: <http://www.w3.org/2002/07/owl#>.
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>.
@prefix skos: <http://www.w3.org/2004/02/skos/core#>.
@prefix xsd: <http://www.w3.org/2001/XMLSchema#>.
@prefix xsd: <http://www.w3.org/2001/XMLSchema#>.
@prefix agent: <http://eulersharp.sourceforge.net/2003/03swap/agent#>.
@prefix organism: <http://eulersharp.sourceforge.net/2003/03swap/organism#>.
@prefix mic: <http://www.agfa.com/w3c/2009/microbiology#>.
@prefix clinskosch: <http://www.agfa.com/w3c/2009/clinicalSKOSSchemes#>.
@prefix abther: <http://www.agfa.com/w3c/2009/antibioticTherapy#>.
@prefix bac: <http://www.agfa.com/w3c/2009/bacteria#>.

<http://www.agfa.com/w3c/2009/bacteria>
	a owl:Ontology;
	dce:title """Bacteria"""@en;
	dce:creator """Hans Cools, MD; Agfa Healthcare/Belgium"""@en;
	dce:contributor """Until 2010: Pieterjan De Potter; Ghent University - IBBT/ELIS - Multimedia Lab/Belgium"""@en;
	dce:publisher """Agfa Healthcare/Belgium"""@en;
	dce:description """Formal description of bacteria in general way."""@en;
	skos:note """For taxonomic relation http://www.uniprot.org/taxonomy/ is used."""@en;
	dce:format """OWL Full"""@en;
	rdfs:comment """Copyright (c) 2009 Agfa-Gevaert Group / Ghent University - IBBT/ELIS - Multimedia Lab All Rights Reserved THIS IS UNPUBLISHED PROPRIETARY SOURCE CODE OF Agfa-Gevaert Group/ Ghent University - IBBT/ELIS - Multimedia Lab The copyright notice above does not evidence any actual or intended publication of such source code."""@en.

#
# CLASSES
#

bac:Bacterium
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """bacterium"""@en;
	skos:definition """Unicellular organism without intracellular membranes, different from Archaeum mainly in DNA replication."""@en;
	rdfs:subClassOf mic:UnicellularOrganism, [
		#a owl:Restriction; owl:onProperty agent:hasDescendant; owl:allValuesFrom bac:Bacterium], [
		#a owl:Restriction; owl:onProperty agent:hasAscendant; owl:allValuesFrom bac:Bacterium], [
		#a owl:Restriction; owl:onProperty agent:hasAscendant; owl:minCardinality "1"^^xsd:nonNegativeInteger], [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/2>].

bac:BacterialPopulation
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """bacterial population"""@en;
	skos:definition """Aggregation of bacteria growing together."""@en;
	rdfs:subClassOf agent:Group;
	rdfs:subClassOf [
		a owl:Restriction; owl:onProperty foaf:member; owl:someValuesFrom bac:Bacterium], [
		a owl:Restriction; owl:onProperty foaf:member; owl:minCardinality "2"^^xsd:nonNegativeInteger].

bac:BacterialColony
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """bacterial colony"""@en;
	skos:definition """Aggregation of bacteria growing together as offspring of a single cell."""@en;
	rdfs:subClassOf agent:Offspring, bac:BacterialPopulation.

bac:Proteobacterium
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Proteobacterium"""@en;
	rdfs:subClassOf bac:Bacterium, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/1236>];
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "409852006"^^clinskosch:sct20080731DT].

bac:Betaproteobacterium
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Betaproteobacterium"""@en;
	rdfs:subClassOf bac:Proteobacterium;
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "409853001"^^clinskosch:sct20080731DT].

bac:Neisserialis
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Neisserialis"""@en;
	rdfs:subClassOf bac:Betaproteobacterium;
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "427587002"^^clinskosch:sct20080731DT].

bac:Neisseriacea
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Neisseriacea"""@en;
	rdfs:subClassOf bac:Neisserialis;
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "115072003"^^clinskosch:sct20080731DT].

bac:Neisseria
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Neisseriacea"""@en;
	rdfs:subClassOf bac:Neisseriacea;
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "59083001"^^clinskosch:sct20080731DT].

bac:NeisseriaMeningitidis
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Neisseria meningitidis"""@en;
	rdfs:subClassOf bac:Neisseria, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/487>];
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "17872004"^^clinskosch:sct20080731DT].

bac:Gammaproteobacterium
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Gammaproteobacterium"""@en;
	rdfs:subClassOf bac:Proteobacterium, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/1236>];
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "413864003"^^clinskosch:sct20080731DT].

bac:Vibrionales
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Vibrionales"""@en;
	rdfs:subClassOf bac:Gammaproteobacterium, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/135623>].

bac:Vibrionaceae
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Vibrionaceae"""@en;
	rdfs:subClassOf bac:Vibrionales, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/641>].

bac:Vibrio
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Vibrio"""@en;
	rdfs:subClassOf bac:Vibrionaceae, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/662>].

bac:VibrioCholerae
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Vibrio cholerae"""@en;
	rdfs:subClassOf bac:Vibrio, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/666>].

bac:Enterobacterialis
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Enterobacterialis"""@en;
	rdfs:subClassOf bac:Gammaproteobacterium, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/91347>];
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "417937002"^^clinskosch:sct20080731DT].

bac:Enterobacteriacea
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Enterobacteriacea"""@en;
	rdfs:subClassOf bac:Enterobacterialis, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/543>];
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "106544002"^^clinskosch:sct20080731DT].
	
bac:Escherichia
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Escherichia"""@en;
	rdfs:subClassOf bac:Enterobacteriacea, [
			a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/561>];
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "64735005"^^clinskosch:sct20080731DT].

bac:EscherichiaColi
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Escherichia coli"""@en;
	rdfs:subClassOf bac:Escherichia, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/562>];
	skos:exactMatch [
		a skos:Concept; skos:inScheme clinskosch:sct20080731; skos:notation "112283007"^^clinskosch:sct20080731DT].
	
bac:EscherichiaColiUTI89
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Escherichia coli strain UTI89"""@en; # synonym: UPEC
	skos:definition """Escherichia coli strain that causes urinary tract infections."""@en;
	rdfs:subClassOf bac:EscherichiaColi, [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/364106>].

bac:StreptococcusPneumoniae
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	rdfs:label """Streptococcus pneumoniae"""@en;
	rdfs:comment """Most common bacterial cause of pneumonia in all age groups except newborn infants."""@en;
	rdfs:subClassOf [
		a owl:Restriction; owl:onProperty organism:hasTaxon; owl:allValuesFrom <http://purl.uniprot.org/taxonomy/189423>].

#
# PROPERTIES
#

bac:resistantTo
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	skos:definition """Specifying an antibiotic a bacterium is resistant to."""@en;
	rdfs:domain bac:Bacterium;
	rdfs:range [a owl:Restriction; owl:onProperty agent:playsRole; owl:someValuesFrom abther:Antibiotic].
	
bac:susceptibleTo
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	skos:definition """Specifying an antibiotic a bacterium is susceptible to."""@en;
	rdfs:domain bac:Bacterium;
	rdfs:range [a owl:Restriction; owl:onProperty agent:playsRole; owl:someValuesFrom abther:Antibiotic].

bac:intermediateSusceptibleTo
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/bacteria#>;
	skos:definition """Specifying an antibiotic a bacterium is intermediately susceptible to."""@en;
	rdfs:domain bac:Bacterium;
	rdfs:range [a owl:Restriction; owl:onProperty agent:playsRole; owl:someValuesFrom abther:Antibiotic].