@prefix dce: <http://purl.org/dc/elements/1.1/>.
@prefix owl: <http://www.w3.org/2002/07/owl#>.
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>.
@prefix xsd: <http://www.w3.org/2001/XMLSchema#>.
@prefix skos: <http://www.w3.org/2004/02/skos/core#>.
@prefix dct: <http://purl.org/dc/terms/>.
@prefix fos: <http://eulersharp.sourceforge.net/2003/03swap/foster#>.
@prefix space: <http://eulersharp.sourceforge.net/2003/03swap/space#>.
@prefix doc: <http://eulersharp.sourceforge.net/2003/03swap/document#>.
@prefix clinproc: <http://www.agfa.com/w3c/2009/clinicalProcedure#>.
@prefix clisko: <http://www.agfa.com/w3c/2009/clinicalSKOSSchemes#>.
@prefix clinima: <http://www.agfa.com/w3c/2009/clinicalImaging#>.
@prefix microscopic: <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>.

<http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging>
	a owl:Ontology;
	dce:title """Clinical Microscopic Imaging"""@en;
	dce:creator """Hans Cools, MD; Agfa Healthcare, Belgium"""@en;
	dce:contributor """Thibaut Tiberghien; IPAL Lab, Singapore"""@en;
	dce:publisher """Agfa Healthcare/Belgium"""@en;
	dce:description """Formal general description of clinical microscopic imaging."""@en;
	dce:format """OWL Full"""@en;
	rdfs:comment """Copyright (c) 2009 Agfa-Gevaert Group and Ghent University - IBBT/ELIS - Multimedia Lab. All Rights Reserved. THIS IS UNPUBLISHED PROPRIETARY SOURCE CODE OF Agfa-Gevaert Group and Ghent University - IBBT/ELIS - Multimedia Lab The copyright notice above does not evidence any actual or intended publication of such source code."""@en.

#
# CLASSES
#

microscopic:Imaging
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	rdfs:label """clinical microscopic imaging"""@en;
	skos:definition """Patient tissue sample examining through microscopic imaging."""@en;
	rdfs:subClassOf clinima:Imaging.

microscopic:Image
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	rdfs:label """clinical microscopic image"""@en;
	skos:definition """Image of a patient tissue sample through a microscope."""@en;
	rdfs:subClassOf clinima:Image.

microscopic:WholeSlideImage
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	rdfs:label """clinical microscopic whole slide image"""@en;
	skos:definition """Image of a whole slide through a microscope."""@en;
	rdfs:subClassOf microscopic:Image. # , [
#		a owl:Restriction; owl:onProperty microscopic:imageOf; owl:someValuesFrom micro:Slide].

microscopic:RegionOfInterest
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	rdfs:label """region of interest"""@en;
	skos:definition """Region of a microscopic image for which interest for examining exists."""@en;
	rdfs:subClassOf microscopic:Image.

microscopic:RegionOfAssessment
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	rdfs:label """region of assessment"""@en;
	skos:definition """Region of a microscopic image as object of examining."""@en;
	rdfs:subClassOf microscopic:Image.

microscopic:FrameImage	# = microscopic:HighPowerField ?
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	rdfs:label """frame image"""@en; # = high power field
	skos:definition """Region of a microscopic image of maximum magnification of an objective being used, with an area of 2048x2048 pixels."""@en;
	rdfs:subClassOf microscopic:Image.

microscopic:CellNucleusImage
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	rdfs:label """microscopic image of a cell nucleus"""@en;
	skos:definition """ ."""@en.

microscopic:MitosisImage
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	rdfs:label """microscopic image of a mitosis"""@en;
	skos:definition """ ."""@en;
	rdfs:subClassOf microscopic:Image.

microscopic:Mask
	a rdfs:Class;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	rdfs:label """Mask of microscopic image of a mitosis"""@en;
	skos:definition """ ."""@en.

#
# PROPERTIES
#

microscopic:imageOf
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a patient's tissue sample represented by a microscopic image."""@en;
	rdfs:subPropertyOf doc:imageOf;
	rdfs:domain microscopic:Image;
#	rdfs:range micro:Slide
	.

microscopic:hasImage
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a microscopic image of a patient's tissue sample."""@en;
#	rdfs:domain micro:Slide;
	rdfs:range microscopic:Image.

microscopic:hasRegionOfInterest
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a region of interest of a whole slide image."""@en;
	rdfs:domain microscopic:WholeSlideImage;
	rdfs:range microscopic:RegionOfInterest.

microscopic:regionOfInterestOf
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a whole slide image having a region of interest."""@en;
	rdfs:domain microscopic:RegionOfInterest;
	rdfs:range microscopic:WholeSlideImage.

microscopic:hasRegionOfAssessment
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a region of assessment of a region of interest."""@en;
	rdfs:domain microscopic:RegionOfInterest;
	rdfs:range microscopic:RegionOfAssessment.

microscopic:regionOfAssessmentOf
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a region of interest having a region of assessment."""@en;
	rdfs:domain microscopic:RegionOfAssessment;
	rdfs:range microscopic:RegionOfInterest.

#microscopic:hasHighPowerField
#	a owl:ObjectProperty;
#	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
#	skos:definition """Specifying a high power field of a region of assessment."""@en;
#	rdfs:subPropertyOf space:contains;
#	rdfs:domain microscopic:RegionOfAssessment;
#	rdfs:range microscopic:HighPowerField.

microscopic:hasFrameImage # if frame = high power field: replace by the above
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a frame image of a region of assessment."""@en;
	rdfs:domain microscopic:RegionOfAssessment;
	rdfs:range microscopic:FrameImage.

microscopic:frameImageOf
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a region of assessment having a frame image."""@en;
	rdfs:domain microscopic:FrameImage;
	rdfs:range microscopic:RegionOfAssessment.

microscopic:hasMitosisImage
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a mitosis image of a frame image."""@en;
	rdfs:domain microscopic:FrameImage;
	rdfs:range microscopic:MitosisImage.

microscopic:mitosisImageOf
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a frame image having a mitosis image."""@en;
	rdfs:domain microscopic:MitosisImage;
	rdfs:range microscopic:FrameImage.

microscopic:hasnumberOfHighPowerFields
	a owl:ObjectProperty;
	rdfs:isDefinedBy <http://www.agfa.com/w3c/2009/clinicalMicroscopicImaging#>;
	skos:definition """Specifying a number of high power fields of a region of assessment."""@en;
	rdfs:domain microscopic:RegionOfAssessment;
	rdfs:range xsd:nonNegativeInteger.